TreeMe

• Visualisation of large phylogenetic trees (>1000 OTUs)
• Combine trees: unites bootstrap labels of several trees onto a single tree
• Full access to each node: modify node caption, branch caption, branch width, branch length, etc.
• Annotate internal nodes (cluster nodes, clusters)
• Collapse, Expand and Flip clusters
• Re-root trees by using an outgroup
• Define and visualise tags, e.g. arrows, boxes, text labels, etc.
• Automatic replacing of taxon abbreviations (e.g. GenBank accession numbers) by complete names (e.g. by species names) using tab-delimited replacement files (edited with Microsoft EXCEL).
• Fast location of nodes by searching for node names or other properties
• Edit trees: move nodes, delete internal nodes, ...
• Add links to taxa (e.g. to GenBank) and jump to the sequence data with a single mouse click!
• Clipboard functions: Copy tree and insert into other software (Word, Powerpoint, ...)
• Printing of trees
• Imports: NEWICK (Phylip, MrBayes), NEXUS (Paup), ...
• Outputs: NEWICK (Phylip, MrBayes), NEXUS (Paup), Vector Graphics (EMF, Windows Enhanced Metafile)
• ...

Keywords: tree visualisation, annotation, view, edit