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Manual DNA sequence alignment editor

Align - Manual sequence alignment editor
Download Align
Purchasing Align:
Request a free trial license to use the full spectrum of features for one month and free of charge!
First License   299.00 Euro
Further Licenses  299.00 Euro
Update  99.00 Euro
Prices are without value added tax.

  • Alignment of DNA sequence, RNA sequence, protein sequence and other data
  • Imports and exports various sequence file formats, e.g. Paup-Nexus, Phylip, Fasta, EMBL, GenBank, DCSE, and others.
  • Find/Highlight sequence motives in your molecular sequence alignment (including wildcards ? or *)
  • Wizard for automatic processing of sequence alignments for phylogenetic analyses
  • Define phylogenetic masks: Which sites are good for phylogenetic analysis?
  • Select/Deselect sequences and save selection profiles to define subsets.
  • Sort sequences by: accession numbers, taxonomy, arrangement in a phylogentic tree and others
  • Several cursor shapes: normal, exclusive (edits all sequences except cursor position), ex- and insertional, left-ended cursor
  • Change the cursor to edit several sequences simulataneously
  • Analyze sequences and alignments: similarities, p-distances, RASA, ...
  • Manipulate aligned sequences: Translate DNA/RNAs to protein using your own codon usage table
  • Cut aligned sequences: e.g. remove common positions, where a mask sequence contains special characters
  • Create sequences: e.g. consensus sequences, frequency of characters, sites that are only present in selected species (signatures), ...
  • Full access to all GenBank fields
  • Batch replacement of accession numbers by other fields in foreign files, e.g. replace labels in a tree file. This is not necessary if you have TreeMe.
  • ... and many other features.

Keywords: Manual sequence alignment editor, DNA, RNA, protein, wizard, prepare for phylogenetic analyses

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